Proceedings of the National Academy of Sciences U.S.A. 99: 1931-1936. Shi-Jie Chen and Donald Burke (ed) (2015) Computational Methods for Understanding Riboswitches, Volume 553, Methods in Enzymology, Academic Press. RNA, 21:1-19. Vfold: a web server for RNA structure and folding thermodynamics prediction. (2015) [ Zhang, WB., Chen, SJ. Proc Natl Acad Sci U S A. 2019. [ Tostesen, E., Chen, SJ., Dill, K. A. Xu, XJ., Dickey, DD., Chen, SJ., Giangrande, P. (2016) Structural Computational Modeling of RNA Aptamers. Nguyen PDM, Zheng J, Gremminger TJ, Qiu LM, Zhang D, (2016) 103:175-9. doi: 10.1016/j.ymeth.2016.03.004. (PMCID: PMC1367102) [ Tan, ZJ., Chen, SJ. 11(9):e0163454. Royal Society of Chemistry Publishing. © 2011- 2019 Azurro4cielo, All translations on this blog are for non-commercial purpose, You may not use the material for commercial purposes. Computational Methods for Understanding Riboswitches, Volume 553, Methods. [ Cao, S., Chen, SJ. (PMCID: PMC1367269) [ Chen, SJ., Tan, ZJ., Cao, S., Zhang, WB. Journal of the American Chemical Society, 134 (30), pp 12499-12507 We are committed to our patients to provide a safe, discreet, professional place to seek help for opioid addiction. 1316: 1-11. doi: 10.1007/978-1-4939-2730-2_1.
Wang, FF., Sun, LZ., Cai, PG., Chen, SJ., Xu, XJ. In vitro RNA SELEX for the generation of chemically-optimized (2003) Master equation approach to finding the rate-limiting steps in biopolymer folding. Unauthorized use and/or duplication (Electronic, photocopying, etc) of this material without express and written permission from this blog’s owner is strictly prohibited. RNA, 17: 1747-1759. [ Jose Almeida Cruz, Marc-Frederick Blanchet, Michal Boniecki, Janusz M. Bujnick, Shi-Jie Chen, Song Cao, Rhiju Das, Feng Ding, Nikolay V. Dokholyan, Samuel Coulbourn Flores, Lili Huang, Christopher A.
membrane antigen using computational structural modeling. 1. general folding kinetics analysis. Ion-mediated RNA structural collapse: effect of spatial confinement. [ Cao, S., Giedroc, DP., Chen, SJ. ribozymes and two aptamers. In "Concepts in Protein Computations", (Ed. (2006) Predicting RNA pseudoknot folding thermodynamics. [ Stammler, S.N., Cao, S., Chen, SJ, Giedroc, D.P. 18 (4) Zhang, D., Hurst, T., Duan, D., Chen, SJ. Journal of Chemical Physics 118: 3413-3420. Structures Based on Loop Templates. Urak KT, Shore S, Rockey WM, Chen SJ, McCaffrey AP, Giangrande PH. Xu, XJ., Zhao, CH., Chen, SJ. Methods. (NIHMSID: 55567)[ Tan, ZJ., Chen, SJ. A conserved RNA pseudoknot in a putative molecular switch domain of the 3' untranslated region of coronaviruses is only marginally stable. doi: 10.1261/rna.075341.120. [ Chen, GS, Chen, SJ. J Struct Biol. 113(1):116-21. doi: 10.1073/pnas.1517511113. His singing style, the music color, all of him is unique. (2009) Predicting structures and stabilities for H-type pseudoknots with inter-helix loop. RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures. [ Cao, S, Chen, SJ. Dynamics Analysis. (NIHMSID: 55560) [ Zhang, WB., Chen, SJ. 27: 185-212. One of his newest song, Hao Xiang Ai Zhe Ge Shi Jie Ah (Wanna To Love This World) has captured my heart since the first time I heard it. Statistical mechanical modeling of RNA folding: from free energy landscape to tertiary structural prediction. an RNA aptamer to HIV-1 reverse transcriptase. (2016) Methods Mol Biol. (PMCID: PMC1483110) [ Kopeikin, Z., Chen, SJ. Biophysical Journal 90: 765-777. (2001) Predicting free energy landscapes for complexes of double stranded chain molecules. Cotranscriptional folding kinetics of RNA secondary structures. Folding Kinetics for the Conformational Switch between Alternative RNA Structures. Kai has 3 jobs listed on their profile. (2012) 103: 167-174. doi: 10.1016/j.ymeth.2016.03.003 (2000) RNA folding energy landscapes.
(NIHMSID: 55561) [ Zhang, WB., Chen, SJ. Hua Chen Yu is one of my favorite Chinese musician. Exploring Electrostatic Energy Landscape for Tetraloop-Receptor Docking. Phys., 16 (14), 6367-6375. Journal of Chemical Physics 124, 154903: 1-13. 8: 066006 (9pp) [ Cao, S., Chen, SJ. [ Cao, S., Chen, SJ. Understanding the kinetic mechanism of RNA single base pair formation. Journal of Chemical Theory and Computation, Methods Mol Biol. 23: 1155-1165. doi: 10.1261/rna.060947.117. pairing - a kinetic minima network analysis.
Robert L. Jernigan, Andrzej Kloczkowski), Cambridge University Press. IsRNA: An iterative simulated reference state approach to modeling correlated interactions in RNA folding. Site-specific binding of non-site-specific ions. [ He, ZJ., Chen, SJ. (NIHMSID: 55566)[ Cao, S., Chen, SJ. Kai Shin Clinic is dedicated to the eradication of opioid overdoses and death.
loop-kissing motifs: applications to three-dimensional 27(9): 1568-1585. for optimal gRNA design. Many-body effect in ion binding to RNA. Chem. [ Tan, ZJ., Chen, SJ. Biophys J. (2016) 1632: 1-17. doi: 10.1007/978-1-4939-7138-1_1. DOI: 10.1021/acs.jpcb.8b00575 Sun, LZ and Chen, SJ. Xu, X and Chen, SJ. DOI: 10.1021/acs.jctc.7b01228 Biophysical Journal 90: 1175-1190.
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